Hello All,
I would like to add to the discussion some of the potential negative impacts of microbial applications of synthetic biology.
LM microorganisms are now being commercialised, e.g. the new application of genome edited soil bacteria sold as a biofertilizer by PivotBio since 2019. LM microorganisms (including viruses and microalgae), are also being proposed for a wide variety of environments (e.g. soil, livestock guts, wild animal populations, marine and fresh water ecosystems) and applications (e.g. biocontrol, biofertilizers, bioremediation, public health (e.g. self-spreading transgenic viruses), conservation/climate (e.g. in vivo editing of animal gut microbiomes). (e.g. see
https://www.genewatch.org/uploads/f03c6d66a9b354535738483c1c3d49e4/gm-microorganisms-fin.pdf)
Microorganism applications, particularly those aimed at environmental release, raise many potential negative impacts, due to their capacity for rapid replication, spread and persistence, and gene flow, introducing a lack of controllability and added evolutionary dimensions.
A central risk of spread and persistence raises concerns that applications may result in a form of ‘living pollution’ with unpredictable exposure and transboundary movement potential. Dispersal routes (in general) include air, leaf litter, pollen, seeds, insects, or soil-associated animals or fungi. Moreover, dispersed microorganisms have been shown to establish both transiently, and over the long-term, with even transient invaders capable of causing shifts in microbial communities (Sessitsch et al., 2023). Several pathogens have for example, been detected in both rain and snow samples, and rain is also a key reservoir for leaf (phlyosphere) microbiota, e.g., for tomatoes (Mechan Llontop et al., 2021). Microbes introduced by humans have a long history of becoming invasive, with potential for global impacts, with (Ladau et al., 2025) warning against the potential for ‘low probability, high consequence’ invasive events. Such a risk increases with scalability of releases, if such applications are widely adopted (Heinemann & Walker, 2021). This issue is relevant to Target 6 of the KM GBF on reducing rates of introduction of invasive alien species.
Genetic elements such as antibiotic resistance genes, can spread through wastewater treatment sites and rivers (Cai et al., 2014; Mao et al., 2015; L. Zhang et al., 2024), and bacterial aerosols can spread in landfill sites (Cyprowski et al., 2019).
Food/feed and digestive microbiome applications are also relevant to unintended spread. Foods consumed by people can get contaminated with cattle gut microbes, as occurs with E.coli outbreaks, for example, from lettuce crops that have been sprayed with manure. Microbes could also be potentially transmitted via milk (Lyons et al., 2020).
Horizontal gene transfer (HGT) is also a significant risk, and is long recognised as a ‘pillar of bacterial evolution’ (Arnold et al., 2022). HGT raises the risk of transfer not only of engineered traits, but also of unintended mutations that may arise in a GM microbe. It may have a variety of implications depending on the trait transferred, the nature of the unintended mutations, and the behaviour of the transferred DNA within the context of the genome and biology of the nontarget organism and its environment, with implications for biodiversity and human health. E.g. Virulence factors, or metabolic traits may increase pathogenicity of microbes, or offer selective advantage to particular microbial species, resulting in shifts in community composition, with potential impacts on the functions that such microbiome communities mediate, e.g., the mediation of human/animal health by gut microbes (Borodovich et al., 2022; Dapa et al., 2023).
HGT hotspots include animal guts (relevant to applications targeting livestock microbiomes), as well as the plant rhizosphere. Bacterial-derived HGT has also been documented in animals e.g. in whiteflies, potentially underlying the rise of outbreaks following fertilizer treatments (Yang et al., 2024). The use of dead microbes (e.g. in food products) also does not ensure against HGT.
While measures are being designed to seek to contain spread, e.g., at the molecular level (known as ‘biological containment’), they remain under development, and will introduce more genetic modifications with their own risks and complexities (Ke et al., 2021).
Evolutionary dynamics presents additional risks of e.g. potential pathogenicity, or zoonotic spillover. Concerns have been raised regarding the potential instability of genetic changes over time (e.g., Eckerstorfer et al., 2024). The dynamic nature of mutation and recombination events in wild global viromes (viral genomes), are speculated to play a defining role in spillover events (Apari & Földvári, 2023; Lentzos et al., 2022). A further concern is whether pests or diseases targeted for biocontrol by GM microbes will also evolve resistance (Eckerstorfer et al., 2024).
Uncertainties are increased by significant knowledge gaps that challenge the ability to sufficiently ensure against adverse impacts on biodiversity. E.g. with the application of GM viruses, knowing the limits of host species is very difficult, with the potential for spill-over events. Unintended impacts of the genetic engineering process or design may also alter host range. Spread and persistence are also dependent on various factors including fitness of the microbe, which cannot be easily tested in the lab due to environmental mediators. Such knowledge gaps and accompanying uncertainties cannot be resolved with additional risk assessment methods such as computer modelling.
The development of LM microorganisms also raises direct biosecurity concerns regarding potential dual use applications and unintended evolution of pathogens.
Regarding contained use, Careful oversight is also necessary to ensure that applications do indeed, remain properly contained. With a potential increase in scale of contained use applications, the risks of environmental leaks increase, warranting careful oversight of biosafety practice in preventing unintended escapes. Despite this, some industry players appear to be advocating for weakening regulations on contamination events from contained use, such as the presence of engineered DNA in food products (Lensch et al., 2024). Contamination and escape of micro-organisms has already been documented in several cases. Novo Nordisk, for example, has documented contamination with 3 different species of bacteria in three different batches of its weight-loss drugs. Reports of malpractice add to risks and are another aspect that must be properly regulated (FDA, 2023; Reuters, 2023). Antibiotic resistance genes have also been detected in food enzyme products (Fraiture et al., 2024).
It is thus my view that the risks and uncertainties associated with LM microorganism applications (generated via both first generation and genome editing techniques), leaves an absence of reliable data on LM microorganisms, and thus an inadequate basis for assessing their potential risk remains. In accordance with the precautionary approach, it remains premature for engineered microorganisms to be safely released into the environment. Such potential applications warrant further study of the broad implications of these technologies including biosafety, socioeconomic, cultural and ethical impacts.
Thanks very much, Eva
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